Pediatric Cancer Dataset
Add Your Data
Species & Genome
Fruit fly dm3
Fruit fly dm6
SV, CNV File URL
VCF File URL
Either SVCNV file or VCF file is required; you can also submit both.
FPKM File URL (optional)
URL for this track
Oepn in new tab
Show Embedding JS Code
Custom Track URL
Return to the Form
More on custom track
Host and launch custom GenomePaint track from DNAnexus
Tutorial on downloading data from NCI Genomic Data Commons and converting to custom tracks
Illustrating oncogene activation by non-coding variants in Cohort View of T-ALL.
Matrix View reviews mutual-exclusive or co-mutation pattern, for association with patient outcome.
Visualize multi-omics data with dynamic range in Sample View.
Sample View of interchromsomal rearrangement leading to MYC dysregulation by enhancer-hijacking.
Assessing aberrant splicing in CREBBP caused by somatic splice site variants.
MYC dysregulation by enhancer duplications in pediatric cancers.
Exploring complex EGFR alterations in TCGA GBM cohort.
Supplementary figure 3:
Cohort View shows different mutation mechanisms causing loss-of-function in tumor suppressors.
Supplementary figure 5:
Cohort View enables associating mutation or expression data with patient outcomes.
Supplementary figure 6:
B-ALL shows diverse alterations targeting CREBBP RING domain.
Supplementary figure 7:
Previously unreported cases of likely MYC enhancer duplication/amplification in pediatric tumors and cell line.
Supplementary figure 8:
In situ Hi-C shows MYC interaction with duplicated enhancers in NALM6 and NALM16.
Supplementary figure 9:
Phased sequencing coverage in NALM6.
Supplementary figure 10:
DUX4 but not NOTCH1 likely binds at N-ME in NALM6.
Supplementary figure 11:
In EGFR-amplified GBM, clonality of oncogenic coding mutations can vary with the presence or absence of the EGFRvIII isoform.
Supplementary figure 12:
Illustrating the EGFR exon 8 ITD event along with the reinterpretation of a sequence mutation.
Supplementary figure 14:
CDKN2A/2B focal deletion and sequence mutations from adult diffuse large B-cell lymphoma (DLBC).
Supplementary figure 15:
TERT sequence mutations in adult cutaneous melanoma (SKCM).
GenomePaint User Tutorial
Open in Google Doc
- 8th October 2020 (Latest)
Ask us at Google Group